Environmental DNA Analysis Tools | eDNAmap and phyloBARCODER

eDNAmap

Visualize marine environmental DNA metabarcoding data on a map.

Map sequences or species of interest using built-in ASV tables or your own.
Identify sampling sites with similar species composition.
Look up fish habitats by scientific name.

Open tool User guide

Citation

Inoue J, Hirai J, Ikeba K, Yu Z, Ahmed SI, Lin Z, Lin Y, Wong MK-S, Shinzato C, Itoh S, Ito S-i, Saito H, Hyodo S. (2026). eDNAmap: A Metabarcoding Web Tool for Comparing Marine Biodiversity, With Special Reference to Teleost Fish. Molecular Ecology Resources 26: e70066. doi:10.1111/1755-0998.70066

phyloBARCODER

Identify species from DNA sequences.

Infer phylogenetic trees from your sequences and reference sequences to determine species names and boundaries.
Choose among four reference database options to identify species: animals, all organisms (three domains), plants, and fungi.
Identify species for all ASV sequences using BLAST searches.

Open tool User guide

Citation

Inoue J, Shinzato C, Hirai J, Itoh S, Minegishi Y, Ito S-i, Hyodo S. (2024). phyloBARCODER: A Web Tool for Phylogenetic Classification of Eukaryote Metabarcodes Using Custom Reference Databases. Molecular Biology and Evolution 41: msae111. doi:10.1093/molbev/msae111